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  • UCSF Chimera Home Page
    UCSF Chimera is a program for the interactive visualization and analysis of molecular structures and related data, including density maps, trajectories, and sequence alignments It is available free of charge for noncommercial use Commercial users, please see Chimera commercial licensing
  • Download UCSF Chimera
    Download Chimera Current Production Releases See the release notes for a list of new features and other information For more recent changes, use the snapshot and daily builds; they are less tested but usually reliable 64-bit Releases: 32-bit releases are no longer supported Daily Builds New builds are made when the code changes
  • Download UCSF ChimeraX
    ChimeraX is the state-of-the-art visualization program from the Resource for Biocomputing, Visualization, and Informatics at UC San Francisco It is free for academic, government, nonprofit, and personal use; commercial users, please see commercial licensing Please cite ChimeraX in publications
  • UCSF ChimeraX Home Page
    UCSF ChimeraX (or simply ChimeraX) is the next-generation molecular visualization program from the Resource for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera ChimeraX can be downloaded free of charge for academic, government, nonprofit, and personal use Commercial users, please see ChimeraX commercial licensing
  • UCSF ChimeraX vs. Chimera
    ChimeraX and Chimera are different programs, with different interfaces and capabilities that overlap significantly, but not completely ChimeraX has capabilities that go far beyond those in Chimera, including completely new tools and other major advantages such as better performance on large data ChimeraX is under active development and is based on modern software frameworks that extend its
  • UCSF ChimeraX User Guide
    UCSF ChimeraX is the successor program to UCSF Chimera In ChimeraX, menu: Help User Guide shows this page in the ChimeraX browser General
  • Command: alphafold
    version 1 (Jul 2021): ~360,000 sequences, reference proteomes of 21 species including Homo sapiens; used by Chimera 1 3, which does not have a version option version 2 (Dec 2021 and Jan 2022 releases combined): ~1 million sequences, v1 + most of the manually curated entries (SwissProt) + sequences relevant to neglected tropical disease or
  • ChimeraX version 1. 9 has been released
    Dear Dr Morsey, Here are instructions on how to open AlphaFold3-generated structures in ChimeraX (I think this may have been the gist of your question?): 1 If you run a job on the AlphaFold server, you can download the results as a zip file 2 If you unzip it, you will see 15 files, 5 of which are cif files There are 5 cif files because for each job, AF3 produces five predicted
  • UCSF Chimera Tutorials
    Chimera Tutorials A set of tutorials is included in the Chimera User's Guide The expanded "Getting Started" tutorial is more suitable for printing (more self-contained rather than hyperlinked) than the above Video tutorials and tutorials from past Chimera workshops are also available This page contains still more tutorials
  • Citing UCSF Chimera
    UCSF Chimera is developed by the UCSF Resource for Biocomputing, Visualization, and Informatics, supported in part by the National Institutes of Health Citations are important for demonstrating the value of our work to the NIH and other sources of support





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